Phylogenetic Analysis of the Plant‐specific Zinc Finger‐Homeobox and Mini Zinc Finger Gene Families
Identifieur interne : 002130 ( Main/Exploration ); précédent : 002129; suivant : 002131Phylogenetic Analysis of the Plant‐specific Zinc Finger‐Homeobox and Mini Zinc Finger Gene Families
Auteurs : Wei Hu ; Claude W. Depamphilis [États-Unis] ; Hong Ma [États-Unis]Source :
- Journal of Integrative Plant Biology [ 1672-9072 ] ; 2008-08.
English descriptors
- KwdEn :
Abstract
Zinc finger‐homeodomain proteins (ZHD) are present in many plants; however, the evolutionary history of the ZHD gene family remains largely unknown. We show here that ZHD genes are plant‐specific, nearly all intronless, and related to MINI ZINC FINGER (MIF) genes that possess only the zinc finger. Phylogenetic analyses of ZHD genes from representative land plants suggest that non‐seed plant ZHD genes occupy basal positions and angiosperm homologs form seven distinct clades. Several clades contain genes from two or more major angiosperm groups, including eudicots, monocots, magnoliids, and other basal angiosperms, indicating that several duplications occurred before the diversification of flowering plants. In addition, specific lineages have experienced more recent duplications. Unlike the ZHD genes, MIFs are found only from seed plants, possibly derived from ZHDs by loss of the homeodomain before the divergence of seed plants. Moreover, the MIF genes have also undergone relatively recent gene duplications. Finally, genome duplication might have contributed substantially to the expansion of family size in angiosperms and caused a high level of functional redundancy/overlap in these genes.
Url:
DOI: 10.1111/j.1744-7909.2008.00681.x
Affiliations:
Links toward previous steps (curation, corpus...)
- to stream Istex, to step Corpus: 001B62
- to stream Istex, to step Curation: 001B61
- to stream Istex, to step Checkpoint: 000566
- to stream Main, to step Merge: 002192
- to stream Main, to step Curation: 002130
Le document en format XML
<record><TEI wicri:istexFullTextTei="biblStruct"><teiHeader><fileDesc><titleStmt><title xml:lang="en">Phylogenetic Analysis of the Plant‐specific Zinc Finger‐Homeobox and Mini Zinc Finger Gene Families</title>
<author><name sortKey="Hu, Wei" sort="Hu, Wei" uniqKey="Hu W" first="Wei" last="Hu">Wei Hu</name>
</author>
<author><name sortKey="Depamphilis, Claude W" sort="Depamphilis, Claude W" uniqKey="Depamphilis C" first="Claude W." last="Depamphilis">Claude W. Depamphilis</name>
</author>
<author><name sortKey="Ma, Hong" sort="Ma, Hong" uniqKey="Ma H" first="Hong" last="Ma">Hong Ma</name>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">ISTEX</idno>
<idno type="RBID">ISTEX:B2601AD10F2391785F1142D92EB498A2F18FA7F7</idno>
<date when="2008" year="2008">2008</date>
<idno type="doi">10.1111/j.1744-7909.2008.00681.x</idno>
<idno type="url">https://api.istex.fr/document/B2601AD10F2391785F1142D92EB498A2F18FA7F7/fulltext/pdf</idno>
<idno type="wicri:Area/Istex/Corpus">001B62</idno>
<idno type="wicri:Area/Istex/Curation">001B61</idno>
<idno type="wicri:Area/Istex/Checkpoint">000566</idno>
<idno type="wicri:doubleKey">1672-9072:2008:Hu W:phylogenetic:analysis:of</idno>
<idno type="wicri:Area/Main/Merge">002192</idno>
<idno type="wicri:Area/Main/Curation">002130</idno>
<idno type="wicri:Area/Main/Exploration">002130</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title level="a" type="main" xml:lang="en">Phylogenetic Analysis of the Plant‐specific Zinc Finger‐Homeobox and Mini Zinc Finger Gene Families</title>
<author><name sortKey="Hu, Wei" sort="Hu, Wei" uniqKey="Hu W" first="Wei" last="Hu">Wei Hu</name>
</author>
<author><name sortKey="Depamphilis, Claude W" sort="Depamphilis, Claude W" uniqKey="Depamphilis C" first="Claude W." last="Depamphilis">Claude W. Depamphilis</name>
<affiliation wicri:level="4"><country xml:lang="fr" wicri:curation="lc">États-Unis</country>
<wicri:regionArea>Department of Biology and the Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, PA 16802</wicri:regionArea>
<placeName><region type="state">Pennsylvanie</region>
<settlement type="city">University Park (Pennsylvanie)</settlement>
</placeName>
<orgName type="university">Université d'État de Pennsylvanie</orgName>
</affiliation>
</author>
<author><name sortKey="Ma, Hong" sort="Ma, Hong" uniqKey="Ma H" first="Hong" last="Ma">Hong Ma</name>
<affiliation wicri:level="4"><country xml:lang="fr" wicri:curation="lc">États-Unis</country>
<wicri:regionArea>Department of Biology and the Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, PA 16802</wicri:regionArea>
<placeName><region type="state">Pennsylvanie</region>
<settlement type="city">University Park (Pennsylvanie)</settlement>
</placeName>
<orgName type="university">Université d'État de Pennsylvanie</orgName>
</affiliation>
</author>
</analytic>
<monogr></monogr>
<series><title level="j">Journal of Integrative Plant Biology</title>
<idno type="ISSN">1672-9072</idno>
<idno type="eISSN">1744-7909</idno>
<imprint><publisher>Blackwell Publishing Asia</publisher>
<pubPlace>Melbourne, Australia</pubPlace>
<date type="published" when="2008-08">2008-08</date>
<biblScope unit="volume">50</biblScope>
<biblScope unit="issue">8</biblScope>
<biblScope unit="page" from="1031">1031</biblScope>
<biblScope unit="page" to="1045">1045</biblScope>
</imprint>
<idno type="ISSN">1672-9072</idno>
</series>
<idno type="istex">B2601AD10F2391785F1142D92EB498A2F18FA7F7</idno>
<idno type="DOI">10.1111/j.1744-7909.2008.00681.x</idno>
<idno type="ArticleID">JIPB681</idno>
</biblStruct>
</sourceDesc>
<seriesStmt><idno type="ISSN">1672-9072</idno>
</seriesStmt>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Mini Zinc Finger</term>
<term>Physcomitrella</term>
<term>Selaginella</term>
<term>gene duplication</term>
<term>gene family evolution</term>
<term>poplar</term>
<term>zinc finger‐homeodomain proteins</term>
</keywords>
</textClass>
<langUsage><language ident="en">en</language>
</langUsage>
</profileDesc>
</teiHeader>
<front><div type="abstract">Zinc finger‐homeodomain proteins (ZHD) are present in many plants; however, the evolutionary history of the ZHD gene family remains largely unknown. We show here that ZHD genes are plant‐specific, nearly all intronless, and related to MINI ZINC FINGER (MIF) genes that possess only the zinc finger. Phylogenetic analyses of ZHD genes from representative land plants suggest that non‐seed plant ZHD genes occupy basal positions and angiosperm homologs form seven distinct clades. Several clades contain genes from two or more major angiosperm groups, including eudicots, monocots, magnoliids, and other basal angiosperms, indicating that several duplications occurred before the diversification of flowering plants. In addition, specific lineages have experienced more recent duplications. Unlike the ZHD genes, MIFs are found only from seed plants, possibly derived from ZHDs by loss of the homeodomain before the divergence of seed plants. Moreover, the MIF genes have also undergone relatively recent gene duplications. Finally, genome duplication might have contributed substantially to the expansion of family size in angiosperms and caused a high level of functional redundancy/overlap in these genes.</div>
</front>
</TEI>
<affiliations><list><country><li>États-Unis</li>
</country>
<region><li>Pennsylvanie</li>
</region>
<settlement><li>University Park (Pennsylvanie)</li>
</settlement>
<orgName><li>Université d'État de Pennsylvanie</li>
</orgName>
</list>
<tree><noCountry><name sortKey="Hu, Wei" sort="Hu, Wei" uniqKey="Hu W" first="Wei" last="Hu">Wei Hu</name>
</noCountry>
<country name="États-Unis"><region name="Pennsylvanie"><name sortKey="Depamphilis, Claude W" sort="Depamphilis, Claude W" uniqKey="Depamphilis C" first="Claude W." last="Depamphilis">Claude W. Depamphilis</name>
</region>
<name sortKey="Ma, Hong" sort="Ma, Hong" uniqKey="Ma H" first="Hong" last="Ma">Hong Ma</name>
</country>
</tree>
</affiliations>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Bois/explor/OrangerV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 002130 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 002130 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Wicri/Bois |area= OrangerV1 |flux= Main |étape= Exploration |type= RBID |clé= ISTEX:B2601AD10F2391785F1142D92EB498A2F18FA7F7 |texte= Phylogenetic Analysis of the Plant‐specific Zinc Finger‐Homeobox and Mini Zinc Finger Gene Families }}
This area was generated with Dilib version V0.6.25. |